HsaEX6097497 @ hg19
Exon Skipping
Gene
ENSG00000145555 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:7593]
Coordinates
chr5:16680056-16682122:-
Coord C1 exon
chr5:16681980-16682122
Coord A exon
chr5:16681418-16681612
Coord C2 exon
chr5:16680056-16680213
Length
195 bp
Sequences
Splice sites
3' ss Seq
ACTTTAATCTTTTTTTCCAGGAT
3' ss Score
10.84
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
ACCCAACTCGTTTGTGATCATCACGGCCAACCGGGTGCTGCACTGCAACGCCGACACGCCGGAGGAGATGCACCACTGGATAACCCTGCTGCAGAGGTCCAAAGGGGACACCAGAGTGGAGGGCCAGGAATTCATCGTGAGAG
Seq A exon
GATGGTTGCACAAAGAGGTGAAGAACAGTCCAAAGATGTCTTCACTGAAACTGAAGAAACGGTGGTTTGTACTCACCCACAATTCCCTGGATTACTACAAGAGTTCAGAGAAGAACGCGCTCAAACTGGGGACCCTGGTCCTCAACAGCCTCTGCTCTGTCGTCCCCCCAGATGAGAAGATATTCAAAGAGACAG
Seq C2 exon
GCTACTGGAACGTCACCGTGTACGGGCGCAAGCACTGTTACCGGCTCTACACCAAGCTGCTCAACGAGGCCACCCGGTGGTCCAGTGCCATTCAAAACGTGACTGACACCAAGGCCCCGATCGACACCCCCACCCAGCAGCTGATTCAAGATATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145555-'51-49,'51-48,52-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(47.2=69.4),PF0016924=PH=PU(3.8=8.2)
A:
PF0016924=PH=FE(61.9=100)
C2:
PF0016924=PH=PD(33.3=66.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAACTCGTTTGTGATCATCA
R:
CGTTTTGAATGGCACTGGACC
Band lengths:
242-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)