RnoEX6009014 @ rn6
Exon Skipping
Gene
ENSRNOG00000010161 | Myo10
Description
myosin X [Source:RGD Symbol;Acc:1307193]
Coordinates
chr2:78057147-78058933:+
Coord C1 exon
chr2:78057147-78057289
Coord A exon
chr2:78057791-78057985
Coord C2 exon
chr2:78058776-78058933
Length
195 bp
Sequences
Splice sites
3' ss Seq
GCTTGGCCCTTCCTTTCCAGGGT
3' ss Score
9.63
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
ACCCAACTCATTCGTGATCATCACGGCCAACCGGGTGCTGCACTGCAACGCAGACACACCAGAGGAGATGCACCACTGGATAACACTGCTGCAGAGATCCAAGGGGGACACCAGGGTGGAGGGCCAGGAGTTCATCGTCAGAG
Seq A exon
GGTGGTTGCATAAGGAAGTGAAGAACAGCCCGAAGATGTCCTCGTTGAAACTGAAGAAGCGGTGGTTCGTGCTGACACACAATTCCCTGGATTACTACAAGAGCTCAGAGAAAAATGCTCTGAAACTGGGCACTCTGGTCCTCAACAGCCTGTGCTCCGTCGTGCCCCCAGATGAGAAGATATTCAAAGAGACAG
Seq C2 exon
GCTACTGGAATGTCACCGTGTATGGGCGCAAACACTGTTACCGACTCTACACGAAACTACTGAATGAGGCGACTCGGTGGTCCAGCGCCATTCAGAATGTGACTGACACCAAGGCTCCAATTGACACGCCCACCCAGCAGCTGATCCAAGATATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010161-'52-48,'52-47,54-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(47.2=69.4),PF0016924=PH=PU(3.8=8.2)
A:
PF0016924=PH=FE(61.9=100)
C2:
PF0016924=PH=PD(33.3=66.0)
Main Skipping Isoform:
ENSRNOT00000065897fB9220
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACACACCAGAGGAGATGCA
R:
ATCTTGGATCAGCTGCTGGGT
Band lengths:
244-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]