BtaEX6077433 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013657 | CHRNA5
Description
Bos taurus cholinergic receptor, nicotinic, alpha 5 (CHRNA5), mRNA. [Source:RefSeq mRNA;Acc:NM_174514]
Coordinates
chr21:31468075-31488100:+
Coord C1 exon
chr21:31468075-31468376
Coord A exon
chr21:31483605-31483756
Coord C2 exon
chr21:31488056-31488100
Length
152 bp
Sequences
Splice sites
3' ss Seq
TCTAAAAATTTGTTGTACAGGAT
3' ss Score
5.74
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
Exon sequences
Seq C1 exon
AAACCCGCCCGGGACTGGAGGTTACCCTGGCGCCAGCGGAGGAGCGGAGCACCGGGTCTACTGCAGCTGCTGGCACTTGGCTCCAGCTCACACTCCCGGTTCTGTTTCTCGGGTCCGCGTTCCCCGCGCGACCGTCGTGTGGCGGCTCCCTGCGTTGACGCAAGGGTCCTGGTCGATGGCTGCGCCGGGGTGGGGGCGCTGGGTCCTCGGCCTCGGGCCCCTCCTGCTCCAGGTCTTCCTCCCTTTCCAGCTGGTCGCAGGGCGCTGGGGTCCGGAGGGCGCGGGGGGCGGCGTGCGCCGAG
Seq A exon
GATTAGCTGAACCATCCGTTGTTGCCAAACACGAAGATAGTTTGTTTAAGGATTTATTTCAAGACTACGAAAGATGGGTTCGTCCTGTGGAACACCTGAATGACAGAATAAAAATAAAGTTCGGCCTCGCAATATCTCAGTTAGTGGATGTG
Seq C2 exon
GATGAGAAAAATCAGTTAATGACAACCAATGTCTGGTTGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013657-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(19.1=76.5)
C2:
PF0293118=Neur_chan_LBD=FE(6.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACTCCCGGTTCTGTTTCT
R:
TGGTTGTCATTAACTGATTTTTCTCA
Band lengths:
242-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]