MmuEX6066065 @ mm10
Exon Skipping
Gene
ENSMUSG00000035594 | Chrna5
Description
cholinergic receptor, nicotinic, alpha polypeptide 5 [Source:MGI Symbol;Acc:MGI:87889]
Coordinates
chr9:54980880-55000496:+
Coord C1 exon
chr9:54980880-54981115
Coord A exon
chr9:54998012-54998163
Coord C2 exon
chr9:55000452-55000496
Length
152 bp
Sequences
Splice sites
3' ss Seq
CCTAAAAACTTGTTATGCAGGGT
3' ss Score
3.53
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
AGCAGTGGCAGTCGAAGGCACTAATATTTACAATGCCAAGTGATGACCGCACAGGCAGCATGGCCTACTCTGGAAGCAATTGCCTATCATTTTCGCGGATGACTTGAATGAATGTCAGAGCTGTCAGTCACAGTTGTCCTTCAGAGTCCTCCAGTTTATCCATCTCATTTACAAGGAAGAGAAAATAGACGCACAAAGGAAGAGTGATTTGAACAAGATGCAGATCTCGAATGCAG
Seq A exon
GGTTGCCTGAGCTATCCTCTGCTGCAAAACATGAAGACAGTTTGTTTAGGGATTTATTTGAAGACTATGAAAAGTGGGTTCGTCCTGTGGAACACCTGAGTGACAAGATAAAAATCAAGTTTGGCCTTGCAATATCTCAGTTAGTGGACGTG
Seq C2 exon
GATGAGAAAAACCAGCTAATGACCACCAACGTCTGGTTGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035594-'2-6,'2-2,4-6=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(19.1=76.5)
C2:
PF0293118=Neur_chan_LBD=FE(6.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATGCCAAGTGATGACCGC
R:
CAGACGTTGGTGGTCATTAGCT
Band lengths:
242-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types