GgaEX6007414 @ galGal3
Exon Skipping
Gene
ENSGALG00000003021 | F1NIT6_CHICK
Description
NA
Coordinates
chr10:4576901-4583005:-
Coord C1 exon
chr10:4582969-4583005
Coord A exon
chr10:4577380-4577531
Coord C2 exon
chr10:4576901-4576945
Length
152 bp
Sequences
Splice sites
3' ss Seq
AAGTTGCTTTTATTGTGCAGGTG
3' ss Score
6.98
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
CCCGGAGCCGGCCCGGCCGCCCGCCCCCCTCAGGCGG
Seq A exon
GTGTATCTGAACCTTCTTTTGTTGCCAAGAGTGAAGATCGTTTGTTTAAACATTTATTTGAAGACTATCAAAGATGGGTTCGCCCGGTGGAGCACTTGAATGATACAATAAAAATCAAGTTTGGTCTTGCAATCTCGCAGCTAGTAGATGTG
Seq C2 exon
GATGAGAAGAATCAACTGATGACCACGAATGTCTGGCTGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003021-'1-6,'1-2,3-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.057 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(19.1=76.5)
C2:
PF0293118=Neur_chan_LBD=FE(6.9=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]