MmuEX6066065 @ mm9
Exon Skipping
Gene
ENSMUSG00000035594 | Chrna5
Description
cholinergic receptor, nicotinic, alpha polypeptide 5 [Source:MGI Symbol;Acc:MGI:87889]
Coordinates
chr9:54829273-54848303:+
Coord C1 exon
chr9:54829273-54829528
Coord A exon
chr9:54845819-54845970
Coord C2 exon
chr9:54848259-54848303
Length
152 bp
Sequences
Splice sites
3' ss Seq
CCTAAAAACTTGTTATGCAGGGT
3' ss Score
3.53
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
ACCGAGTGGTAAGGTGGGCTTCGTGCAGAAGCTGAAGAGCGAGCGGCGAGCGGCTTCCGAGAAACGAGCGGATTTCGGCGGCAGCTCTTGTGCTCCGTCCCTCAGGGCCCGGAGTAATCCGCGAGGCAGCCGTCGGCGGGCGGACGGGCGATGGCGGCGCGGGGGTCGCGGCGGCGCGCGCTGCGCCTGCTCTTGATGGTGCAGCTGCTGGCGGGGCGCTGGCGGCCGGCCGGGGCGGCGCGGGGCGCGCGGGGAG
Seq A exon
GGTTGCCTGAGCTATCCTCTGCTGCAAAACATGAAGACAGTTTGTTTAGGGATTTATTTGAAGACTATGAAAAGTGGGTTCGTCCTGTGGAACACCTGAGTGACAAGATAAAAATCAAGTTTGGCCTTGCAATATCTCAGTTAGTGGACGTG
Seq C2 exon
GATGAGAAAAACCAGCTAATGACCACCAACGTCTGGTTGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035594-'1-3,'1-2,2-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(9.8=33.3)
A:
PF0293118=Neur_chan_LBD=PU(19.1=76.5)
C2:
PF0293118=Neur_chan_LBD=FE(6.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCGAGAAACGAGCGGATT
R:
CGTTGGTGGTCATTAGCTGGT
Band lengths:
234-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: