RnoEX6035865 @ rn6
Exon Skipping
Gene
ENSRNOG00000013610 | Chrna5
Description
cholinergic receptor nicotinic alpha 5 subunit [Source:RGD Symbol;Acc:2347]
Coordinates
chr8:59561721-59582921:+
Coord C1 exon
chr8:59561721-59561979
Coord A exon
chr8:59580124-59580275
Coord C2 exon
chr8:59582877-59582921
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTCTCAAACTTGTTATGCAGGGT
3' ss Score
6.24
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
ACGGAGCAGCGAGGTGGGCTTCGTTCAGGCGCTGAAGAGCGAGCGGCGAGCGGCGAGAGACACCCGAGGAACGAGAGGAGTTCGGCGGCAGCCCGCTTGCTCGGCCCCTCGGGGTCCGGAGTTATCCGCGAGGCGGCCGTCGGCGGGCGGGCGATGGCGGTGCGGGGGTCGCGGCGGCGCGCGCTGCGCCTGCTCTTGATGGTGCAGCTGCTGGCAGGGCGCTGGCGGCCGACCGGGGCGGCGCGGGGCACGCGGGGAG
Seq A exon
GGTTGCCTGAACTATCCTCTGCTGCCAAACATGAAGACAGCTTGTTTAGGGATTTATTTGAAGACTACGAAAGGTGGGTTCGCCCTGTGGAACACCTGAGCGACAAGATAAAAATCAAGTTTGGCCTTGCGATATCTCAGTTAGTGGACGTG
Seq C2 exon
GATGAGAAAAACCAGCTGATGACGACGAACGTCTGGTTGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013610-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=0.078 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(9.8=57.1)
A:
PF0293118=Neur_chan_LBD=PU(19.1=76.5)
C2:
PF0293118=Neur_chan_LBD=FE(6.9=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACACCCGAGGAACGAGAG
R:
TGCTTCAACCAGACGTTCGTC
Band lengths:
247-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]