BtaEX6077629 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007304 | CLK3
Description
Bos taurus CDC-like kinase 3 (CLK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001034248]
Coordinates
chr21:34442774-34445594:-
Coord C1 exon
chr21:34445498-34445594
Coord A exon
chr21:34445155-34445221
Coord C2 exon
chr21:34442774-34442890
Length
67 bp
Sequences
Splice sites
3' ss Seq
CTGTTTCTTTTCTCTCCTAGATG
3' ss Score
11.73
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGAAGCCAACAGAGCAGTAAGCGCAGCAGCCGGAGTGTGGAAGATGACAAGGAGGGCCACCTGGTGTGCCGGATCGGCGATTGGCTCCAAGAGCGAT
Seq A exon
ATGAGATCGTGGGGAACCTGGGTGAAGGCACCTTTGGCAAGGTGGTGGAGTGCTTGGACCATGCCAG
Seq C2 exon
AGGGAAGTCTCAGGTTGCCCTGAAGATCATCCGCAATGTAGGCAAGTACCGGGAGGCCGCCCGGCTAGAAATCAACGTTCTCAAGAAGATCAAGGAGAAGGACAAAGAGAACAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007304-'11-9,'11-7,12-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.424 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(0.1=0.0)
A:
PF0006920=Pkinase=PU(6.9=95.7)
C2:
PF0006920=Pkinase=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCCAACAGAGCAGTAAGC
R:
AACGTTGATTTCTAGCCGGGC
Band lengths:
176-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]