HsaEX0015701 @ hg19
Exon Skipping
Gene
ENSG00000179335 | CLK3
Description
CDC-like kinase 3 [Source:HGNC Symbol;Acc:2071]
Coordinates
chr15:74912350-74917359:+
Coord C1 exon
chr15:74912350-74912566
Coord A exon
chr15:74914835-74914901
Coord C2 exon
chr15:74917243-74917359
Length
67 bp
Sequences
Splice sites
3' ss Seq
CAATTTCTTTTCTCTCCTAGATG
3' ss Score
9.26
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CCATGACCGCCTGCCCTACCAGAGGAGGTACCGGGAGCGCCGTGACAGCGATACATACCGGTGTGAAGAGCGGAGCCCATCCTTTGGAGAGGACTACTATGGACCTTCACGTTCTCGTCATCGTCGGCGATCGCGGGAGAGGGGGCCATACCGGACCCGCAAGCATGCCCACCACTGCCACAAACGCCGCACCAGGTCTTGTAGCAGCGCCTCCTCG
Seq A exon
ATGAGATTGTGGGGAACCTGGGTGAAGGCACCTTTGGCAAGGTGGTGGAGTGCTTGGACCATGCCAG
Seq C2 exon
AGGGAAGTCTCAGGTTGCCCTGAAGATCATCCGCAACGTGGGCAAGTACCGGGAGGCTGCCCGGCTAGAAATCAACGTGCTCAAAAAAATCAAGGAGAAGGACAAAGAAAACAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179335_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.783 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006920=Pkinase=PU(26.2=95.7)
C2:
PF0006920=Pkinase=FE(12.3=100)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTACTATGGACCTTCACGT
R:
CCACGTTGCGGATGATCTTCA
Band lengths:
169-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)