MmuEX0011721 @ mm10
Exon Skipping
Gene
ENSMUSG00000032316 | Clk3
Description
CDC-like kinase 3 [Source:MGI Symbol;Acc:MGI:1098670]
Coordinates
chr9:57755252-57761040:-
Coord C1 exon
chr9:57760824-57761040
Coord A exon
chr9:57758284-57758350
Coord C2 exon
chr9:57755252-57755368
Length
67 bp
Sequences
Splice sites
3' ss Seq
CAGCTTCTTCTTTCTCACAGATG
3' ss Score
9.56
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CCATGATCGTATACCCTACCAGCGGAGGTACCGGGAACACCGTGACAGTGATACGTATCGGTGTGAAGAGCGGAGCCCATCTTTTGGAGAGGACTGCTATGGGTCTTCACGTTCTCGACATCGGAGACGGTCACGAGAGAGGGCGCCGTACCGTACCCGCAAGCATGCCCACCACTGTCACAAACGCCGTACCAGGTCTTGTAGCAGTGCTTCCTCG
Seq A exon
ATGAGATCGTGGGGAACCTGGGTGAAGGCACCTTTGGCAAGGTGGTGGAGTGCTTGGACCATGCCAG
Seq C2 exon
AGGGAAGTCACAGGTTGCCCTGAAGATCATCCGTAATGTGGGCAAGTATCGGGAAGCTGCTCGTCTAGAAATTAATGTTCTCAAGAAAATCAAGGAGAAAGACAAGGAAAATAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032316_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.741 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
PF0006920=Pkinase=PU(6.9=95.7)
C2:
PF0006920=Pkinase=FE(12.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGTTCTCGACATCGGAGA
R:
CGAGCAGCTTCCCGATACTTG
Band lengths:
174-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types