GgaEX1015764 @ galGal4
Exon Skipping
Gene
ENSGALG00000001362 | CLK3
Description
dual specificity protein kinase CLK3 [Source:RefSeq peptide;Acc:NP_001012542]
Coordinates
chr10:1977227-1978491:-
Coord C1 exon
chr10:1978398-1978491
Coord A exon
chr10:1978062-1978128
Coord C2 exon
chr10:1977227-1977343
Length
67 bp
Sequences
Splice sites
3' ss Seq
GCTCCTGTTTTCTCTCCTAGATG
3' ss Score
10.56
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
AGAAGCCAACAGAGCAGTAAGCGCAGCAGGAGCGTGGAAGATGACAAGGAAGGCCACCTGGTGTGCAGGATCGGCGATTGGCTTCAAGAGCGAT
Seq A exon
ATGAAATTGTCGGCAGCCTTGGCGAAGGCACTTTTGGCAAAGTGGTGGAGTGTGTAGACCACGCCAG
Seq C2 exon
AGGCAAATCGCAGGTGGCACTGAAAATCATAAAAAACGTTGGGAAGTACCGCGAGGCAGCCAGGCTGGAAATTAATGTCCTGAAGAAAATCAAAGAGAAGGACAAGGAGAACAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001362-'6-4,'6-3,8-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.406 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(0.1=0.0)
A:
PF0006920=Pkinase=PU(6.9=95.7)
C2:
PF0006920=Pkinase=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCCAACAGAGCAGTAAGC
R:
GGACATTAATTTCCAGCCTGGC
Band lengths:
174-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]