RnoEX0021845 @ rn6
Exon Skipping
Gene
ENSRNOG00000030126 | Clk3
Description
CDC-like kinase 3 [Source:RGD Symbol;Acc:621259]
Coordinates
chr8:62532791-62538117:-
Coord C1 exon
chr8:62537901-62538117
Coord A exon
chr8:62535266-62535332
Coord C2 exon
chr8:62532791-62532907
Length
67 bp
Sequences
Splice sites
3' ss Seq
CAGCTTCTTCTTTCTCACAGATG
3' ss Score
9.56
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CCATGATCGTATACCCTACCAGAGGAGGTACCGGGAACACCGAGACAGCGATACATATCGGTGTGAAGAGCGGAGCCCATCCTTTGGAGAGGACTGCTATGGGTCTTCACGTTCTCGACATCGGAGACGGTCACGAGAGAGGGGGCCGTACCGTACCCGCAAGCATGCCCACCACTGTCACAAACGTCGTACCAGGTCTTGTAGCAGCGCCTCCTCG
Seq A exon
ATGAGATCGTGGGGAACCTGGGTGAAGGCACCTTTGGCAAGGTGGTGGAGTGCTTGGACCATGCCAG
Seq C2 exon
AGGGAAGTCACAGGTTGCCCTGAAGATCATCCGTAATGTGGGCAAGTACCGGGAAGCTGCTCGTCTAGAAATTAATGTTCTCAAGAAAATCAAGGAGAAAGACAAAGAAAATAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030126_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.808 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006920=Pkinase=PU(6.9=95.7)
C2:
PF0006920=Pkinase=FE(12.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTCTTCACGTTCTCGACA
R:
CCCGGTACTTGCCCACATTAC
Band lengths:
171-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]