GgaEX1015764 @ galGal3
Exon Skipping
Gene
ENSGALG00000001362 | Q5F445_CHICK
Description
NA
Coordinates
chr10:1857363-1858627:-
Coord C1 exon
chr10:1858534-1858627
Coord A exon
chr10:1858198-1858264
Coord C2 exon
chr10:1857363-1857479
Length
67 bp
Sequences
Splice sites
3' ss Seq
GCTCCTGTTTTCTCTCCTAGATG
3' ss Score
10.56
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
AGAAGCCAACAGAGCAGTAAGCGCAGCAGGAGCGTGGAAGATGACAAGGAAGGCCACCTGGTGTGCAGGATCGGCGATTGGCTTCAAGAGCGAT
Seq A exon
ATGAAATTGTCGGCAGCCTTGGCGAAGGCACTTTTGGCAAAGTGGTGGAGTGTGTAGACCACGCCAG
Seq C2 exon
AGGCAAATCGCAGGTGGCACTGAAAATCATAAAAAACGTTGGGAAGTACCGCGAGGCAGCCAGGCTGGAAATTAATGTCCTGAAGAAAATCAAAGAGAAGGACAAGGAGAACAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001362-'4-4,'4-3,6-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.406 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(0.1=0.0)
A:
PF0006920=Pkinase=PU(6.9=95.7)
C2:
PF0006920=Pkinase=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCCAACAGAGCAGTAAGC
R:
GGACATTAATTTCCAGCCTGGC
Band lengths:
174-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]