BtaEX6087281 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:30981432-30994378:+
Coord C1 exon
chr19:30981432-30981643
Coord A exon
chr19:30982756-30982989
Coord C2 exon
chr19:30994211-30994378
Length
234 bp
Sequences
Splice sites
3' ss Seq
CTCACCTGTCTGCCCTCCAGGCC
3' ss Score
10.25
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CTCTGACGGAGGCGCGGGACATCTACACCCACCTGGCGCCACTGCGTCGTCACCTGGAGGACCTCGAGAGCCTGGAGTTTCCTGACGTGAAGCCCCGGCTGCGGCCCCTGCTGCACGTGGTCTGCCTGATCTGGGCCATGTGTGAGTCTTACCGCTGCCCAGGGCGGCTCACAGTGCTGCTGCAAGAGATCTGCAACCTTCTGGTCCAGCAG
Seq A exon
GCCTCTGTTTATCTCTGCCCAGAAGACCTCCTGAGAGGTGAGGTGGAGGAAAGTCAGAGGAAACTGCATGTGGTCGTGGACACCCTGAGCTTCTTCAAGCAGCTGTTTCAGGACAGAAGGGAGAATCTCCATTCTTACTTCAGAGAGAACCAGGAGGTCCGCGAGTGGGATTTCCAGTCCTCTTTGGTCTTTGTGCGACTGGATGGCTTCCTAGGGCGACTGGGCGTGGTGCAG
Seq C2 exon
GATCTTCTGAAGACAACTTCGGATTTCCACAAACTGGAAAAGCTTGAGTTCAGTGGTATCAGAGGAAGTGCCTTGAGCCAGCAGGCCCAGCAGATGTACACCGAATTTCAAGAGATGTACAGGGTCTTCTCAGACTCTTCCTACGACTGCTTGGATCTCCAGAGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'5-7,'5-5,6-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(12.0=100)
A:
PF083857=DHC_N1=FE(13.2=100)
C2:
PF083857=DHC_N1=FE(9.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTTCCTGACGTGAAGCCC
R:
TCTGGAGATCCAAGCAGTCGT
Band lengths:
301-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]