MmuEX6086197 @ mm9
Exon Skipping
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65947051-65960906:-
Coord C1 exon
chr11:65960695-65960906
Coord A exon
chr11:65958741-65958974
Coord C2 exon
chr11:65947051-65947218
Length
234 bp
Sequences
Splice sites
3' ss Seq
CTAATTTATTTACCTCCCAGGCC
3' ss Score
7.16
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CCCTGACCGAGGCCCAGGACATCCATGTGCACCTGTTACCTCTCCAGCAACACCTGGACATCCTGGAAAACGTGGAGTTTCCCAAGGTGAAGGGCAGGCTGCGGCCTCTGCTCCATGTGGTCTGTCTGATTTGGGCCACCTGCAAATGGTACCGTTCCCCTGGGAGGCTCACAGTGCTGCTCCAAGAAATCTGCAACCTCCTCATCCAGCAG
Seq A exon
GCCTCTAATTACCTCAGCCCAGAAGACCTCCTGAGAAGTGAGGTGGAAGAGAGTCAGAAAAAACTGCAAGTGGTCTCAGATACCTTAAGCTTCTTCAAACAGGCATTCCAGGACAGAAGGGAGCACCTCCACACTTACTTCAAGGAGGATTCTGAAGTCAGGGTGTGGGATTTCCAAGCATCTCTGGTGTTTGTGCGACTGGATGGCTTTCTGGGCCGAGTGCACATGGTGGAG
Seq C2 exon
GATCTTCTGAAGACAGCCTTGGATCTCAACAATCTGGAAAAGCTTGAGTTCAGTGGCCTCAGAGGAAACTCCCTGAGTCAGAAAGTCCAACGCATGCATGAGGAATTTGAGGAGATGTACAAGGTCTTCTTGGACTGCTCCTATGACTGTTTGGACCCCAAGGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(12.0=100)
A:
PF083857=DHC_N1=FE(13.2=100)
C2:
PF083857=DHC_N1=FE(12.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACATCCATGTGCACCTGTT
R:
TGCATGCGTTGGACTTTCTGA
Band lengths:
294-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: