HsaEX6021170 @ hg38
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11617411-11629584:+
Coord C1 exon
chr17:11617411-11617622
Coord A exon
chr17:11619548-11619781
Coord C2 exon
chr17:11629417-11629584
Length
234 bp
Sequences
Splice sites
3' ss Seq
CTAATCTGTTTGTATACCAGGCC
3' ss Score
7.83
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CTCTAGCAGAGGCACAGGACATCCATGTGCACCTGATACCGCTCCAGCGCCACCTGGAAGCTCTGGAGAATGCAGAATTTCCGGAGGTGAAGCCCCAGCTGCGGCCCCTGCTCCACGTGGTCTGTCTGATTTGGGCCACATGCAAGTCCTACCGCTCCCCGGGAAGGCTGACTGTGCTGCTCCAGGAGATTTGCAACCTTCTCATCCAGCAG
Seq A exon
GCCTCTAATTATCTCAGCCCAGAAGACCTGCTGAGAAGTGAGGTAGAAGAAAGTCAGAGAAAACTGCAAGTGGTCTCAGACACTTTGAGCTTCTTCAAGCAAGAGTTTCAGGACAGAAGGGAGAATCTCCACACTTACTTCAAAGAGAACCAGGAAGTCAAGGAATGGGATTTCCAGTCTTCTTTGGTCTTTGTGCGATTGGATGGCTTCCTGGGACAACTGCACGTGGTGGAG
Seq C2 exon
GGTCTTCTGAAGACGGCCCTGGATTTCCACAAACTGGGAAAGGTGGAGTTCAGCGGCGTCAGAGGGAATGCTCTGAGTCAGCAGGTCCAGCAAATGCATGAAGAATTTCAAGAGATGTACAGGCTTCTCTCAGGATCCTCCTCCGACTGCCTGTACCTCCAAAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(12.0=100)
A:
PF083857=DHC_N1=FE(13.2=100)
C2:
PF083857=DHC_N1=FE(9.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCACAGGACATCCATGTG
R:
CATTTGCTGGACCTGCTGACT
Band lengths:
300-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains