DreEX6067087 @ danRer10
Exon Skipping
Gene
ENSDARG00000103383 | dnah9
Description
dynein, axonemal, heavy chain 9 [Source:ZFIN;Acc:ZDB-GENE-020925-1]
Coordinates
chr12:191195-192763:-
Coord C1 exon
chr12:192552-192763
Coord A exon
chr12:191742-191975
Coord C2 exon
chr12:191195-191362
Length
234 bp
Sequences
Splice sites
3' ss Seq
GGCCCGAGTGTTGCTTTCAGGCC
3' ss Score
4.04
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CTCATAACGAGTCGAAGAACATCACAACCTTCCTGAAGCCGCTGGAGAGGCTGATCGAGGATCTGGAGAACGCAGACTTCACTGAGCTGAAGGCAAAGATCCCTCCGCTCATGCACACGGTGTGTCTGATCTGGGCCAACTGCAGATACTACAGCAAACCAGCCCGAGTCATTGTGCTCCTGCAGGAGATCTGCAACCTCCTCATACAGCAG
Seq A exon
GCCCGGAGTTTCCTGAACCCGGATGACATCCTGAAAGGTGATGTTCTGGAGAGTCTGCTGCGTGTTCAGGCCGCTGTAGACCTGCTGACACACTTCAAGAACACATATGAGGACAGAAGAGCCAACCTGAGCCACTACCAGAAGAACGAAGACCCAGTCAAGCCCTGGGATTTCTCTCCCCTCATGGTGTTCGTCGGCCTGGATCACTTCATGAAGAGACTCAGAACTATTGAG
Seq C2 exon
ACGGTGCTGCTCACTGTCATGGATATGATGAGGCTGGAGAAGATCGAGTTTGGAGGCATTCAGGGGAAATCTCTCAGCCAGATTGTCCAGCGTTTGCATGAAGACTTCCTGCAGACGTACAAATCCTTCTCAGAGAAGCCCTACGACTGCCTGGATGTTAATAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103383-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(16.5=100)
A:
PF083857=DHC_N1=FE(18.1=100)
C2:
PF083857=DHC_N1=FE(12.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACAACCTTCCTGAAGCCG
R:
TCTTCATGCAAACGCTGGACA
Band lengths:
296-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]