RnoEX6047723 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52673822-52688152:-
Coord C1 exon
chr10:52687941-52688152
Coord A exon
chr10:52685957-52686190
Coord C2 exon
chr10:52673822-52673989
Length
234 bp
Sequences
Splice sites
3' ss Seq
CTAATTTATTTACCTCCCAGGCC
3' ss Score
7.16
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CCCTGACAGAGGCCCAGGACATCCGTGTGCACCTGTTACCGCTCCAACAACACCTGGACATCCTGGAGAACATGGAGTTTCCCGAGGTGAAGGGCAGGCTGCGGCCTCTGCTCCATGTGGTCTGTCTGATTTGGGCTAACTGCAAGTGGTACCGCTCCCCAGGGAGGCTCACGGTGCTGCTCCAGGAAATCTGTAACCTCCTCATCCAGCAG
Seq A exon
GCCTCTAATTACCTCAGCCCGGAAGACCTCCTGAGAAGTGAGGTGGAAGAGAGTCAGAGAAAACTGCAAATAGTCTCAGATACCTTAAGCTTCTTCAAACAGGCATTTCAGGACAGAAGGGAACATCTCCATACTTACTTCAAGGAGGACTCTGAAGTCAGGGCATGGGATTTCCAAGCATCTCTGGTCTTTGTACGACTGGATGGCTTTCTGGGCCGACTACGCATGGTGGAG
Seq C2 exon
GATCTTCTGAAGACAGCCTTGGATTTCAACAAGCTGGAAAAGCTTGAATTCAGTGGCCTCAGAGGAAACTCACTGAGTCAGAAAGTTCAGCAAATGCATGAGGAATTTGAAGAGATGTACAAGGTCTTCCTGGACTGTTCCTATGACTGTTTGAACCCCGAGAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'6-6,'6-5,7-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(12.0=100)
A:
PF083857=DHC_N1=FE(13.2=100)
C2:
PF083857=DHC_N1=FE(9.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGAGTTTCCCGAGGTGA
R:
GCTCTCGGGGTTCAAACAGTC
Band lengths:
308-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]