GgaEX6015797 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GG21]
Coordinates
chr18:1037657-1040520:+
Coord C1 exon
chr18:1037657-1037868
Coord A exon
chr18:1038025-1038258
Coord C2 exon
chr18:1040353-1040520
Length
234 bp
Sequences
Splice sites
3' ss Seq
GTGTGATTTTGCTGTTCCAGGCC
3' ss Score
9.06
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
CTTTGAGCGAAGCCCAGGACATCCACCTGCACCTGAAGCCCCTCAGGCGCCCTTTGGAGGACATAGAGAGGACTGATTTCAGCAAGGTGCAGCCACTCCTGCTCCCCCTGCTCCACGTGGTGTGCTTGACCTGGGTCACCTCCAAGCACTACAGCCAGCCTGCACGCATTGTGGTGCTGCTGCAGGAGATCTGCAACCTTCTCATCCAGCAG
Seq A exon
GCCCTGGTATACCTATCTCCAGAAGACCTTCTAAAAGGGGAGACGGAAGAGAGTATGGGCAAGGTGCAGATGGTGCTCAGCGTCCTGAATGGATTCAAAGAGACATTTGAGGACAGAAGGGAAGAACTTCACACCTACTATAAACCAGACCAAGAAGTGAAGGAGTGGGATTTCCATGCCACGATGGTGTTTGCAAGGCTGGACAGCTTTCTGAAGAGACTGGAGATGGTGGAG
Seq C2 exon
GATCTCCTGGCAAACGCCTTGGATCTGATGAAGCTGGAGAAGATTGAGTTCAGTGGATTTAAAGGGAAGGCCCTGAGTCAGCAGGTCCTGGACATGCATGAGGAATTCCAGGAGGCATACAAGGTCTTTGCAGAGCGAACCTATGACTGCCTCGACCTGACCAATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026090-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(21.9=100)
A:
PF083857=DHC_N1=FE(24.1=100)
C2:
PF083857=DHC_N1=FE(17.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCCACCTGCACCTGAAG
R:
CTCATGCATGTCCAGGACCTG
Band lengths:
297-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]