GgaEX6015797 @ galGal3
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1019584-1022447:+
Coord C1 exon
chr18:1019584-1019795
Coord A exon
chr18:1019952-1020185
Coord C2 exon
chr18:1022280-1022447
Length
234 bp
Sequences
Splice sites
3' ss Seq
GTGTGATTTTGCTGTTCCAGGCC
3' ss Score
9.06
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
CTTTGAGCGAAGCCCAGGACATCCACCTGCACCTGAAGCCCCTCAGGCGCCCTTTGGAGGACATAGAGAGGACTGATTTCAGCAAGGTGCAGCCACTCCTGCTCCCCCTGCTCCACGTGGTGTGCTTGACCTGGGTCACCTCCAAGCACTACAGCCAGCCTGCACGCATTGTGGTGCTGCTGCAGGAGATCTGCAACCTTCTCATCCAGCAG
Seq A exon
GCCCTGGTATACCTATCTCCAGAAGACCTTCTAAAAGGGGAGACGGAAGAGAGTATGGGCAAGGTGCAGATGGTGCTCAGCGTCCTGAATGGATTCAAAGAGACATTTGAGGACAGAAGGGAAGAACTTCACACCTACTATAAACCAGACCAAGAAGTGAAGGAGTGGGATTTCCATGCCACGATGGTGTTTGCAAGGCTGGACAGCTTTCTGAAGAGACTGGAGATGGTGGAG
Seq C2 exon
GATCTCCTGGCAAACGCCTTGGATCTGATGAAGCTGGAGAAGATTGAGTTCAGTGGATTTAAAGGGAAGGCCCTGAGTCAGCAGGTCCTGGACATGCATGAGGAATTCCAGGAGGCATACAAGGTCTTTGCAGAGCGAACCTATGACTGCCTCGACCTGACCAATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(12.0=100)
A:
PF083857=DHC_N1=FE(13.2=100)
C2:
PF083857=DHC_N1=FE(9.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCCACCTGCACCTGAAG
R:
CTCATGCATGTCCAGGACCTG
Band lengths:
297-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]