MmuEX6086197 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:66133549-66147404:-
Coord C1 exon
chr11:66147193-66147404
Coord A exon
chr11:66145239-66145472
Coord C2 exon
chr11:66133549-66133716
Length
234 bp
Sequences
Splice sites
3' ss Seq
CTAATTTATTTACCTCCCAGGCC
3' ss Score
7.16
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CCCTGACCGAGGCCCAGGACATCCATGTGCACCTGTTACCTCTCCAGCAACACCTGGACATCCTGGAAAACGTGGAGTTTCCCAAGGTGAAGGGCAGGCTGCGGCCTCTGCTCCATGTGGTCTGTCTGATTTGGGCCACCTGCAAATGGTACCGTTCCCCTGGGAGGCTCACAGTGCTGCTCCAAGAAATCTGCAACCTCCTCATCCAGCAG
Seq A exon
GCCTCTAATTACCTCAGCCCAGAAGACCTCCTGAGAAGTGAGGTGGAAGAGAGTCAGAAAAAACTGCAAGTGGTCTCAGATACCTTAAGCTTCTTCAAACAGGCATTCCAGGACAGAAGGGAGCACCTCCACACTTACTTCAAGGAGGATTCTGAAGTCAGGGTGTGGGATTTCCAAGCATCTCTGGTGTTTGTGCGACTGGATGGCTTTCTGGGCCGAGTGCACATGGTGGAG
Seq C2 exon
GATCTTCTGAAGACAGCCTTGGATCTCAACAATCTGGAAAAGCTTGAGTTCAGTGGCCTCAGAGGAAACTCCCTGAGTCAGAAAGTCCAACGCATGCATGAGGAATTTGAGGAGATGTACAAGGTCTTCTTGGACTGCTCCTATGACTGTTTGGACCCCAAGGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'5-10,'5-9,6-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(12.0=100)
A:
PF083857=DHC_N1=FE(13.2=100)
C2:
PF083857=DHC_N1=FE(12.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACATCCATGTGCACCTGTT
R:
TGCATGCGTTGGACTTTCTGA
Band lengths:
294-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types