BtaEX6089498 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004249 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:HGNC:30212]
Coordinates
chr19:48275044-48298696:+
Coord C1 exon
chr19:48275044-48275230
Coord A exon
chr19:48286305-48286568
Coord C2 exon
chr19:48298571-48298696
Length
264 bp
Sequences
Splice sites
3' ss Seq
TTCATTTTACTCTTTTTCAGCTA
3' ss Score
9.75
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ACCTCAGCAATCACCCAGCGGATAAGTCCCTGTTCCACCTTGACTAGCAGCACTGCCTCTCCACCAGCCAGCAGCCCCTGCTCCACTCTCCCACCAGTCAGTACAAGTGCGACCGCCAAGGACGGCAGCTATGGGGCCGTCACGAGTCCAACCTCCACCCTTGAAAGCAGAGATAGTGGAATCATTG
Seq A exon
CTACCTTGACAAGCTATTCTGAAAACATGGAACGCACAAAATATGTTGGGGAAAGCAGTAAAGACTTAGGATCTGGAGGAAACCTAAAGCCTTGGCAGTCTCAAAAATCCAGCATGGATTCCTGTTTGTATCGAGTAGATGAAAACATGACGGCATCCACCTACAGTCTGAATAAGATACCAGAGAGGAATTTGGAAACCGTTTTATCACAATCAGTACAGTCTATTCCTCTTTATCTTATGCCACGGCCAAACTCAGTAGCAG
Seq C2 exon
CCACAAGCTCTGCCCACTTGGAGGACCTCGCTTACCTGGATGAACAGAGACATACCCCTTTGAGAACTTCTCTTCGAATGCCAAGACAGAGCATGGCCGGTGCTCGCACGCAACAGGATTTAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004249-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.979 A=0.371 C2=0.372
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGATAAGTCCCTGTTCCA
R:
TAAATCCTGTTGCGTGCGAGC
Band lengths:
293-557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]