GgaEX1000094 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr27:2555884-2572942:+
Coord C1 exon
chr27:2555884-2556070
Coord A exon
chr27:2565799-2566062
Coord C2 exon
chr27:2572817-2572942
Length
264 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTTCCTCCCTTCAAGCCA
3' ss Score
6.67
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AGCTCGGCCGTGACGCAGCGCATCAGCCCCTGCTCCACGCTGACCAGCAGCACGGCCTCACCGCCCGCCAGCAGCCCCTGCTCCACGCTGCCACCCGTCAGCACCAGCGTCCCCGCCAAGGACTGCAGCTACGGGGCCGTCACCAGCCCCACATCCACCCTGGAGAGCAGGGACAGCGGCATCATAG
Seq A exon
CCACTTTGACGAGCTACTCCGAGAACGTGGAGCGCACGAAGTATGGAGGGGAAAGCAGCAAGGAGATGGGCTCGGGAGGCAACCTGAAGCCCTGGCAGTCCCAGAAGTCCAGCATGGACTCGTGTCTGTACCGCGTGGATGAGAACATGACGGCGTCCACCTACAGCCTGAACAAGATCCCGGAGAGGAACCTGGAGACCGTCCTGTCCCAGTCGGTGCAGTCCATCCCGCTGTACCTCATGCCACGGCCCAACTCGGTCGCAG
Seq C2 exon
CCACCAGCTCGGCCCACCTGGAGGACCTGGCATACCTGGACGAGCAGCGGCACACCCCCCTGCGCACCTCCCTCCGCATGCCCCGGCAGAGCGTGGCCGGAGCCCGCACACAGCAGGACCTGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478-'10-6,'10-4,13-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGACGCAGCGCATCAG
R:
CAGGTCCTGCTGTGTGCG
Band lengths:
301-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]