GgaEX1000094 @ galGal3
Exon Skipping
Gene
ENSGALG00000000478 | TANC2
Description
NA
Coordinates
chr27:2470229-2487267:+
Coord C1 exon
chr27:2470229-2470415
Coord A exon
chr27:2480144-2480407
Coord C2 exon
chr27:2487163-2487267
Length
264 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTTCCTCCCTTCAAGCCA
3' ss Score
6.67
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AGCTCGGCCGTGACGCAGCGCATCAGCCCCTGCTCCACGCTGACCAGCAGCACGGCCTCACCGCCCGCCAGCAGCCCCTGCTCCACGCTGCCACCCGTCAGCACCAGCGTCCCCGCCAAGGACTGCAGCTACGGGGCCGTCACCAGCCCCACATCCACCCTGGAGAGCAGGGACAGCGGCATCATAG
Seq A exon
CCACTTTGACGAGCTACTCCGAGAACGTGGAGCGCACGAAGTATGGAGGGGAAAGCAGCAAGGAGATGGGCTCGGGAGGCAACCTGAAGCCCTGGCAGTCCCAGAAGTCCAGCATGGACTCGTGTCTGTACCGCGTGGATGAGAACATGACGGCGTCCACCTACAGCCTGAACAAGATCCCGGAGAGGAACCTGGAGACCGTCCTGTCCCAGTCGGTGCAGTCCATCCCGCTGTACCTCATGCCACGGCCCAACTCGGTCGCAG
Seq C2 exon
CCACCAGCTCGGCCCACCTGGAGGACCTGGCATACCTGGACGAGCAGCGGCACACCCCCCTGCGCACCTCCCTCCGCATGCCCCGGCAGAGCGTGGCCGGAGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478-'2-3,'2-1,4-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.905 A=0.360 C2=0.194
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGACGCAGCGCATCAG
R:
GGCATGCGGAGGGAGGTG
Band lengths:
261-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]