RnoEX6050084 @ rn6
Exon Skipping
Gene
ENSRNOG00000052840 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:RGD Symbol;Acc:1309285]
Coordinates
chr10:93967141-94011939:+
Coord C1 exon
chr10:93967141-93967327
Coord A exon
chr10:93996322-93996585
Coord C2 exon
chr10:94011814-94011939
Length
264 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTATTGTTTTTCAGCAA
3' ss Score
9.45
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ACCTCAGCAATCACCCAGCGAATAAGTCCCTGCTCCACCTTGACAAGCAGCACTGCCTCTCCACCAGCCAGCAGCCCCTGTTCTACGCTCCCACCAGTCAGTACAAATGCAACTGCCAAAGACTGTAGCTATGGGGCTGTCACTAGCCCCACCTCCACCCTAGAAAGCAGAGACAGTGGCATCATTG
Seq A exon
CAACATTAACAAATTATTCTGAAAACATGGAGCGAACAAAATATGTTGGGGAAGCCGGTAAAGAATTGGGCTCTGGAGGAAATCTAAAACCATGGCAGTCTCAAAAATCCAGCATGGACTCCTGTCTGTACCGAGTGGATGAAAACATGGCTGCATCCACATACAGTCTGAACAAGATCCCGGAGCGGAATCTAGAAACAGTTTTATCACAGTCTGTACAGTCTATTCCTTTGTATCTCATGCCTCGGCCAAATTCTGTAGCAG
Seq C2 exon
CCACCAGTTCTGCCCACTTGGAGGACCTTGCTTACCTGGATGAGCAGAGACATACTCCTTTGAGGACGTCTCTTCGAATGCCAAGACAGAGCATGAGTGGTGCTCGCACACAGCAGGATCTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052840-'19-21,'19-19,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.898 A=0.326 C2=0.419
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000081937fB14751
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAATAAGTCCCTGCTCCAC
R:
CTCTGAGATCCTGCTGTGTGC
Band lengths:
296-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]