MmuEX6090459 @ mm10
Exon Skipping
Gene
ENSMUSG00000053580 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:MGI Symbol;Acc:MGI:2444121]
Coordinates
chr11:105779939-105810597:+
Coord C1 exon
chr11:105779939-105780125
Coord A exon
chr11:105798561-105798824
Coord C2 exon
chr11:105810472-105810597
Length
264 bp
Sequences
Splice sites
3' ss Seq
TTTTATTCTTTTTTTTCCAGCAA
3' ss Score
9.37
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ACTTCAGCAATCACCCAGAGAATAAGTCCCTGCTCCACCTTGACTAGCAGCACTGCCTCTCCACCAGCCAGCAGCCCCTGCTCTACGCTCCCACCAGTCAGTACAAATGCAGCTGCCAAGGACTGTAGCTATGGGGCTGTCACCAGCCCCACCTCCACTCTAGAAAGCAGAGACAGTGGCATCATTG
Seq A exon
CAACATTAACAAATTATTCTGAAAACATGGAGCGAACAAAATATGTTGGAGAAGGCAGTAAAGAATTAGGATCTGGAGGAAACCTAAAACCATGGCAGTCTCAAAAATCCAGCATGGACTCTTGTCTGTACCGAGTGGATGAAAACATGGCTGCATCCACATACAGTCTGAACAAGATCCCGGAGCGAAATCTGGAAACAGTTTTATCGCAATCAGTACAGTCTATTCCGTTGTATCTCATGCCTCGGCCAAATTCTGTAGCAG
Seq C2 exon
CCACCAGCTCTGCCCACTTGGAGGATCTTGCTTACCTGGATGAGCAGAGACACACTCCTTTGAGGACATCCCTTAGAATGCCAAGACAGAGCCTGAGTGGTGCTCGAACACAGCAGGATCTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053580-'17-24,'17-21,19-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=0.337 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGAGAATAAGTCCCTGCT
R:
GAGATCCTGCTGTGTTCGAGC
Band lengths:
297-561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types