DreEX6016292 @ danRer10
Exon Skipping
Gene
ENSDARG00000079097 | tanc2a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2a [Source:ZFIN;Acc:ZDB-GENE-060130-180]
Coordinates
chr3:22636990-22645726:+
Coord C1 exon
chr3:22636990-22637179
Coord A exon
chr3:22637629-22637880
Coord C2 exon
chr3:22645598-22645726
Length
252 bp
Sequences
Splice sites
3' ss Seq
CAAATGTCTTCTGTTTACAGCGA
3' ss Score
8.23
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TGCCTCTCCATGACCCAGAGGATCAGCCCCTGCTCCAGTCTGGCCAGCAGCACAGCCTCTCCACCTGCTGGAAGCCCCTGCTCCACTCTGCCTGCTGGAGCCCCTGGTAACATGAGCACCCGAGACTGTGCTTACGGCTCCATCACCAGTCCAACATCCACACTGGAGAGCCGGGACAGCGGCATTATAG
Seq A exon
CGACACTCACGAGTTACTCAGAGAATGCGGAGCACGGAGGCAAACACAGCGAGGGCTCACGGGGCAGCCTGAAACTCTGGCAGGCACAAAAGTCAATGGGCACGGACTCCTTCCTCTATAGGGTGGATGAAAACATGGCCGCCTCCACATACAGCCTCAATAAAATCCCTGAGAGGAGCCTGGAGCACTCTGTGTCTCACTCCGCTCACTCCATCCCGCTCTACCTCATGCCCCGGCCCAACTCTGTGGCAG
Seq C2 exon
CCACCAGTTCGGCTCACCTGGAGGACCTTGCGTATCTGGATGAGCAGAGACAGGCTCCACTGCGCACTTCTTTGAGAATGCCACGTCAGAACTCCGGTTCGAGCCGAACTGGACAAGCAGACATGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079097-'17-21,'17-19,18-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.891 A=0.482 C2=0.545
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGACCCAGAGGATCAGC
R:
ATGTCTGCTTGTCCAGTTCGG
Band lengths:
308-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]