MmuEX6090459 @ mm9
Exon Skipping
Gene
ENSMUSG00000053580 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:MGI Symbol;Acc:MGI:2444121]
Coordinates
chr11:105641253-105671911:+
Coord C1 exon
chr11:105641253-105641439
Coord A exon
chr11:105659875-105660138
Coord C2 exon
chr11:105671786-105671911
Length
264 bp
Sequences
Splice sites
3' ss Seq
TTTTATTCTTTTTTTTCCAGCAA
3' ss Score
9.37
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ACTTCAGCAATCACCCAGAGAATAAGTCCCTGCTCCACCTTGACTAGCAGCACTGCCTCTCCACCAGCCAGCAGCCCCTGCTCTACGCTCCCACCAGTCAGTACAAATGCAGCTGCCAAGGACTGTAGCTATGGGGCTGTCACCAGCCCCACCTCCACTCTAGAAAGCAGAGACAGTGGCATCATTG
Seq A exon
CAACATTAACAAATTATTCTGAAAACATGGAGCGAACAAAATATGTTGGAGAAGGCAGTAAAGAATTAGGATCTGGAGGAAACCTAAAACCATGGCAGTCTCAAAAATCCAGCATGGACTCTTGTCTGTACCGAGTGGATGAAAACATGGCTGCATCCACATACAGTCTGAACAAGATCCCGGAGCGAAATCTGGAAACAGTTTTATCGCAATCAGTACAGTCTATTCCGTTGTATCTCATGCCTCGGCCAAATTCTGTAGCAG
Seq C2 exon
CCACCAGCTCTGCCCACTTGGAGGATCTTGCTTACCTGGATGAGCAGAGACACACTCCTTTGAGGACATCCCTTAGAATGCCAAGACAGAGCCTGAGTGGTGCTCGAACACAGCAGGATCTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053580-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=0.326 C2=0.302
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGAGAATAAGTCCCTGCT
R:
GAGATCCTGCTGTGTTCGAGC
Band lengths:
297-561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: