BtaEX6093219 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011333 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:HGNC:17078]
Coordinates
chr22:7811260-7815170:-
Coord C1 exon
chr22:7815042-7815170
Coord A exon
chr22:7812454-7812660
Coord C2 exon
chr22:7811260-7811376
Length
207 bp
Sequences
Splice sites
3' ss Seq
AGTATTGCCCTCTGTCCTAGGTG
3' ss Score
8.1
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CCTACAATCCGGGCTTTGGCTTTGAAGGTTTTAAGAGAAATCCTAAGGCATCAACCAGCAAGATTTAAAAACTATGCAGAATTGACTGTCATGAAAACACTGGAAGCACATAAAGACCCTCATAAGGAG
Seq A exon
GTGGTGAGATCTGCTGAGGAGGCCGCATCAGTGTTGGCCACTTCCATCAGCCCGGAGCAGTGCATCAAAGTGCTGTGTCCCATCATCCAGACTGCAGACTACCCCATCAACCTGGCTGCCATCAAAATGCAAACAAAAGTAATCGAGAGAGTGTCCAAGGAAACGCTTAACCTGCTTTTGCCAGAGATCATGCCAGGCCTAATACAG
Seq C2 exon
GGTTATGATAATTCGGAAAGCAGTGTTCGGAAAGCTTGTGTCTTCTGCCTGGTGGCTGTTCATGCAGTAATTGGTGATGAACTAAAACCACATCTCAGTCAGCTCACTGGCAGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011333-'56-59,'56-58,57-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127172=Cnd1=FE(21.2=100)
A:
PF127172=Cnd1=FE(34.3=100)
C2:
PF127172=Cnd1=PD(9.6=48.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAATCCGGGCTTTGGCTT
R:
TTACTGCCAGTGAGCTGACTG
Band lengths:
244-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]