GgaEX1015634 @ galGal4
Exon Skipping
Gene
ENSGALG00000011995 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:RefSeq peptide;Acc:NP_001170856]
Coordinates
chr2:45257395-45259836:-
Coord C1 exon
chr2:45259708-45259836
Coord A exon
chr2:45258589-45258795
Coord C2 exon
chr2:45257395-45257511
Length
207 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTATTCTTTCAATAGGTG
3' ss Score
11.38
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CATGCAATTAGAGCTTTGGCATTTAAAGTTCTAAGAGAAATCCTAAGAAATCAGCCAGCAAGGTTTAAGAATTACGCAGAGCTCACAATAATGAAGACATTAGAAGCGCATAAGGATCCTCATAAGGAG
Seq A exon
GTGGTGAGATCTGCTGAAGAAGCTGCTTCCATGCTGGCCATTTCCATTAGCCCAGATCAGTGCATCAAAGTCCTTTGTCCAATTATCCAGACTGCAGACTACCCCATTAATCTGGCTGCAATCAAAATGCAGACAAAAGTCATAGAGAGAGTATCTAAAGAAACTCTTACTCAGCTTTTACCGGAGATTGTGCCAGGTTTAATACAG
Seq C2 exon
GGTTATGATAATTCAGAGAGCAGTGTTCGTAAGGCATGTGTTTTCTGCCTTGTAGCCATTCATGCAGTAATTGGTGATGAACTAAAACCACATCTCAGTCAACTCACTGGCAGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995_MULTIEX2-10/11=9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF102744=ParcG=PU(50.5=81.2)
C2:
PF102744=ParcG=FE(34.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCAATTAGAGCTTTGGCA
R:
TACTGCCAGTGAGTTGACTGAGA
Band lengths:
244-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]