HsaEX0015502 @ hg19
Exon Skipping
Gene
ENSG00000163539 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:17078]
Coordinates
chr3:33543144-33557643:-
Coord C1 exon
chr3:33557515-33557643
Coord A exon
chr3:33552050-33552256
Coord C2 exon
chr3:33543144-33543260
Length
207 bp
Sequences
Splice sites
3' ss Seq
TAATTTCCTATTTTTTTTAGGTG
3' ss Score
9.03
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CCTACAATCAGGGCTTTGGCATTAAAGGTTTTAAGAGAAATCCTAAGGCATCAACCAGCAAGATTTAAAAACTATGCAGAATTGACTGTCATGAAAACATTGGAAGCACATAAAGATCCTCATAAGGAG
Seq A exon
GTGGTGAGATCTGCTGAGGAAGCGGCATCAGTGTTGGCCACTTCAATTAGTCCAGAGCAGTGCATCAAAGTGCTTTGTCCTATCATTCAAACTGCAGACTACCCAATTAATCTGGCTGCAATCAAAATGCAAACAAAAGTGATAGAGAGAGTGTCCAAGGAAACCCTAAACCTGCTTTTGCCAGAGATTATGCCAGGTCTAATACAG
Seq C2 exon
GGTTATGATAATTCAGAGAGCAGTGTTCGGAAAGCTTGTGTCTTCTGCCTGGTGGCTGTTCATGCGGTAATTGGTGATGAACTAAAACCACATCTCAGTCAACTTACTGGCAGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163539_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.009 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127172=Cnd1=FE(39.4=100),PF123333=Ipi1_N=PD(61.7=84.1)
A:
PF127172=Cnd1=FE(34.3=100),PF126123=TFCD_C=FE(37.2=100),PF0298517=HEAT=PU(19.4=8.7)
C2:
PF127172=Cnd1=PD(9.6=48.7),PF126123=TFCD_C=FE(20.8=100),PF0298517=HEAT=PD(74.2=59.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACAATCAGGGCTTTGGCA
R:
AGTAAGTTGACTGAGATGTGGTT
Band lengths:
237-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)