MmuEX6069511 @ mm10
Exon Skipping
Gene
ENSMUSG00000033392 | Clasp2
Description
CLIP associating protein 2 [Source:MGI Symbol;Acc:MGI:1923749]
Coordinates
chr9:113909416-113915254:+
Coord C1 exon
chr9:113909416-113909544
Coord A exon
chr9:113911410-113911616
Coord C2 exon
chr9:113915138-113915254
Length
207 bp
Sequences
Splice sites
3' ss Seq
GGCTCTCCCTTTTGTTCTAGGTG
3' ss Score
11.78
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CCTACAATCCGGGCCTTGGCATTAAAAGTTTTAAAAGAAATCTTAAGGCATCAACCAGCAAGATTCAAAAACTATGCAGAACTAACTGTCATGAAAACACTGGAAGCACATAAAGATCCTCACAAAGAG
Seq A exon
GTGGTGAGATCTGCTGAGGAAGCTGCCTCCGTATTGGCTACTTCCATTAGTCCAGAGCAGTGCATCAAAGTGCTTTGTCCCATCATACAAACCGCTGACTACCCTATTAATCTGGCTGCAATCAAAATGCAAACAAAAGTGATAGAGAGAGTATCCAAGGAGACCCTTAACATGCTCTTACCAGAGATCATGCCGGGTCTAATACAG
Seq C2 exon
GGTTATGATAATTCAGAAAGCAGTGTCCGGAAAGCTTGTGTCTTCTGCCTGGTGGCTGTCCATGCAGTGATTGGTGATGAACTAAAGCCACATCTCAGTCAACTCACTGGTAGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033392-'81-83,'81-82,82-83
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127172=Cnd1=FE(18.0=100),PF126123=TFCD_C=FE(23.0=100)
A:
PF127172=Cnd1=FE(29.2=100),PF126123=TFCD_C=FE(37.2=100)
C2:
PF127172=Cnd1=PD(8.2=48.7),PF126123=TFCD_C=FE(20.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAATCCGGGCCTTGGCAT
R:
TTACTACCAGTGAGTTGACTGAGA
Band lengths:
244-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types