GgaEX1015634 @ galGal3
Exon Skipping
Gene
ENSGALG00000011995 | CLASP2
Description
NA
Coordinates
chr2:44705072-44707513:-
Coord C1 exon
chr2:44707385-44707513
Coord A exon
chr2:44706266-44706472
Coord C2 exon
chr2:44705072-44705188
Length
207 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTATTCTTTCAATAGGTG
3' ss Score
11.38
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CATGCAATTAGAGCTTTGGCATTTAAAGTTCTAAGAGAAATCCTAAGAAATCAGCCAGCAAGGTTTAAGAATTACGCAGAGCTCACAATAATGAAGACATTAGAAGCGCATAAGGATCCTCATAAGGAG
Seq A exon
GTGGTGAGATCTGCTGAAGAAGCTGCTTCCATGCTGGCCATTTCCATTAGCCCAGATCAGTGCATCAAAGTCCTTTGTCCAATTATCCAGACTGCAGACTACCCCATTAATCTGGCTGCAATCAAAATGCAGACAAAAGTCATAGAGAGAGTATCTAAAGAAACTCTTACTCAGCTTTTACCGGAGATTGTGCCAGGTTTAATACAG
Seq C2 exon
GGTTATGATAATTCAGAGAGCAGTGTTCGTAAGGCATGTGTTTTCTGCCTTGTAGCCATTCATGCAGTAATTGGTGATGAACTAAAACCACATCTCAGTCAACTCACTGGCAGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995-'66-72,'66-71,67-72=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF102744=ParcG=PU(47.6=72.5)
C2:
PF102744=ParcG=FE(36.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCAATTAGAGCTTTGGCA
R:
TACTGCCAGTGAGTTGACTGAGA
Band lengths:
244-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]