RnoEX0021497 @ rn6
Exon Skipping
Gene
ENSRNOG00000009161 | Clasp2
Description
cytoplasmic linker associated protein 2 [Source:RGD Symbol;Acc:619789]
Coordinates
chr8:122173947-122181259:+
Coord C1 exon
chr8:122173947-122174075
Coord A exon
chr8:122175808-122176014
Coord C2 exon
chr8:122181143-122181259
Length
207 bp
Sequences
Splice sites
3' ss Seq
GGCTTTCCCTTTTGTTCTAGGTG
3' ss Score
11.74
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CCTACAATCCGGGCCTTGGCGTTAAAAGTTTTAAAAGAAATCTTAAGGCATCAACCAGCAAGATTCAAAAACTATGCAGAGCTAACTGTCATGAAAACATTGGAAGCACATAAAGATCCTCACAAAGAG
Seq A exon
GTGGTGAGGTCTGCTGAGGAAGCTGCCTCCGTGTTGGCTACTTCCATTAGTCCAGAGCAGTGCATCAAAGTGCTTTGTCCAATCATACAGACTGCTGACTACCCAATTAATCTGGCTGCAATCAAAATGCAAACAAAAGTGATAGAGAGAGTGTCCAAGGAGACCCTTAACCTGCTCTTACCAGAGATCATGCCAGGTCTAATACAG
Seq C2 exon
GGTTATGATAATTCAGAAAGCAGTGTCCGGAAAGCTTGTGTCTTCTGCCTGGTGGCTGTCCATGCGGTAATTGGTGATGAACTAAAGCCACATCTCAGTCAACTCACGGGTAGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009161-'68-74,'68-72,70-74
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF127172=Cnd1=FE(21.3=100)
A:
PF127172=Cnd1=FE(34.5=100)
C2:
PF127172=Cnd1=PD(9.1=46.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAATCCGGGCCTTGGC
R:
TTACTACCCGTGAGTTGACTGAGA
Band lengths:
244-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]