MmuEX6069511 @ mm9
Exon Skipping
Gene
ENSMUSG00000033392 | Clasp2
Description
CLIP associating protein 2 [Source:MGI Symbol;Acc:MGI:1923749]
Coordinates
chr9:113818534-113824372:+
Coord C1 exon
chr9:113818534-113818662
Coord A exon
chr9:113820528-113820734
Coord C2 exon
chr9:113824256-113824372
Length
207 bp
Sequences
Splice sites
3' ss Seq
GGCTCTCCCTTTTGTTCTAGGTG
3' ss Score
11.78
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CCTACAATCCGGGCCTTGGCATTAAAAGTTTTAAAAGAAATCTTAAGGCATCAACCAGCAAGATTCAAAAACTATGCAGAACTAACTGTCATGAAAACACTGGAAGCACATAAAGATCCTCACAAAGAG
Seq A exon
GTGGTGAGATCTGCTGAGGAAGCTGCCTCCGTATTGGCTACTTCCATTAGTCCAGAGCAGTGCATCAAAGTGCTTTGTCCCATCATACAAACCGCTGACTACCCTATTAATCTGGCTGCAATCAAAATGCAAACAAAAGTGATAGAGAGAGTATCCAAGGAGACCCTTAACATGCTCTTACCAGAGATCATGCCGGGTCTAATACAG
Seq C2 exon
GGTTATGATAATTCAGAAAGCAGTGTCCGGAAAGCTTGTGTCTTCTGCCTGGTGGCTGTCCATGCAGTGATTGGTGATGAACTAAAGCCACATCTCAGTCAACTCACTGGTAGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033392-'51-54,'51-53,52-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127172=Cnd1=FE(18.0=100),PF126123=TFCD_C=FE(23.0=100)
A:
PF127172=Cnd1=FE(34.5=100),PF126123=TFCD_C=FE(37.2=100),PF0298517=HEAT=PU(19.4=8.7)
C2:
PF127172=Cnd1=PD(9.1=46.2),PF126123=TFCD_C=FE(20.8=100),PF0298517=HEAT=PD(74.2=59.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAATCCGGGCCTTGGCAT
R:
TTACTACCAGTGAGTTGACTGAGA
Band lengths:
244-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: