DreEX6074229 @ danRer10
Exon Skipping
Gene
ENSDARG00000020345 | clasp2
Description
cytoplasmic linker associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2343]
Coordinates
chr19:43228848-43229810:+
Coord C1 exon
chr19:43228848-43228976
Coord A exon
chr19:43229065-43229271
Coord C2 exon
chr19:43229694-43229810
Length
207 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTCTCTCTCTGTCAGGTG
3' ss Score
12.17
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CATGTCATTCGGGCATTAGCCCTGCGGGTGCTGAAGGAAATCCTCAACAGGCAGCCGTGGCGCTTTAAAAACTATGCAGAGCTCACCATTATGAAGGCTCTGGAGGCACATAAAGACCCACACAAAGAG
Seq A exon
GTGGTGCGGGCTGCAGAAGAGGCAGCATCCATGTTGGCCACCTCGATAAGTCCCGATCAGTGTATAAAAGTGTTGTGTCCCATCATCCAGTCAGCGGACTATCCCATCAACCTCGCTGCCATTAAGATGCTCACCAAAGTCATCGACCGTCTGCCCAAAGAGGGTCTCATTCAGATGCTCCCAGAGATCGTCCCCGGCCTCATTCAG
Seq C2 exon
GGTTATGATAACTCTGAGAGCAGTGTACGAAAGGCCTGTGTATTTTGCCTTGTGGCCATCTATGCCGTCATTGGAGAGGATCTGAAACCTCACCTCAGCCAGCTGTCTGGCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020345-'61-60,'61-59,62-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127172=Cnd1=FE(21.6=100)
A:
PF127172=Cnd1=PD(35.8=85.5),PF102744=ParcG=PU(46.6=79.7)
C2:
PF127172=Cnd1=PD(9.8=48.7),PF102744=ParcG=FE(32.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTCATTCGGGCATTAGC
R:
TGGCTGAGGTGAGGTTTCAGA
Band lengths:
230-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]