BtaEX6093370 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014927 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr22:11738305-11747493:+
Coord C1 exon
chr22:11738305-11738370
Coord A exon
chr22:11741664-11741786
Coord C2 exon
chr22:11747458-11747493
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTCCTAACGAGCAGGTT
3' ss Score
5.25
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
AATAAAGAATTTCTTCAAGAAAAAATATTGCAGAGAGCACCAACCATTTCTGAAAGAGCTAAAAAG
Seq A exon
GTTCGGAGAGTACCAGGCTCTAGTGGCCGTCTTCACAAGACAGAAGATGGTGGCTGGGAGTGGAGTGATGATGAATTTGATGAAGAAAGTGAGGAAGGAAAAGCAGCAATTTCACAACTCAGG
Seq C2 exon
TCTCCCAGAGTGAAAGAATCATTAACAAATTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014927-'16-18,'16-16,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=1.000 C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]