DreEX6094689 @ danRer10
Exon Skipping
Gene
ENSDARG00000027500 | oxsr1b
Description
oxidative stress responsive 1b [Source:ZFIN;Acc:ZDB-GENE-040426-723]
Coordinates
chr24:19930282-19936235:-
Coord C1 exon
chr24:19936170-19936235
Coord A exon
chr24:19935334-19935456
Coord C2 exon
chr24:19930282-19930314
Length
123 bp
Sequences
Splice sites
3' ss Seq
GTGTGCGTGTGTGTGTGTAGGTA
3' ss Score
9.39
5' ss Seq
CGGGTAACA
5' ss Score
5.3
Exon sequences
Seq C1 exon
AATAATGAATTTCTGCAGGAGAAATTATTACACAGGGCACCTACAATTACGGAGAGAGCCAGAAAG
Seq A exon
GTACGGCGAGTTCCAGGCTCCAGTGGGAGACTCCATAAAACAGAAGATGGAGAGTGGGAATGGAGTGATGATGAACTCGATGAGGAGAGTGAGGAGGGCAAAGCTGCTGTCGCTGCCTTACGG
Seq C2 exon
TCACCAAGAGTAAAAGAAGGAGAGAATGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027500-'11-14,'11-12,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.636 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTGCAGGAGAAATTATTACACA
R:
CTCTGCATTCTCTCCTTCTTTTACT
Band lengths:
90-213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]