MmuEX6069730 @ mm10
Exon Skipping
Gene
ENSMUSG00000036737 | Oxsr1
Description
oxidative-stress responsive 1 [Source:MGI Symbol;Acc:MGI:1917378]
Coordinates
chr9:119251189-119259267:-
Coord C1 exon
chr9:119259202-119259267
Coord A exon
chr9:119254763-119254885
Coord C2 exon
chr9:119251189-119251224
Length
123 bp
Sequences
Splice sites
3' ss Seq
CACACGCCTTTCTCGCTCAGGTC
3' ss Score
8.31
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
AATAAAGAATTTCTTCAAGAAAAAATACTCCAGAGAGCACCTACCATTTCTGAAAGATCTAAAAAG
Seq A exon
GTCCGCAGAGTCCCCGGCTCCAGTGGCCGTCTCCATAAGACAGAGGACGGAGGCTGGGAGTGGAGTGACGATGAGTTTGATGAGGAGAGCGAGGAAGGGAGAGCTGCCATTTCTCAGCTGAGG
Seq C2 exon
TCTCCCCGAGTAAAAGACTCATTATCCAGTTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036737_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.409 A=0.909 C2=0.604
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types