RnoEX0062789 @ rn6
Exon Skipping
Gene
ENSRNOG00000013136 | Oxsr1
Description
oxidative-stress responsive 1 [Source:RGD Symbol;Acc:1310466]
Coordinates
chr8:127942401-127949025:-
Coord C1 exon
chr8:127948960-127949025
Coord A exon
chr8:127944360-127944482
Coord C2 exon
chr8:127942401-127942436
Length
123 bp
Sequences
Splice sites
3' ss Seq
CCACACGCCTTCTTGTTTAGGTC
3' ss Score
8.66
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
AATAAAGAATTTCTTCAAGAAAAAATACTACAGAGAGCACCTACCATCTCTGAAAGATCTAAAAAG
Seq A exon
GTCCGGAGAGTGCCCGGCTCCAGCGGCCGTCTCCATAAGACAGAGGATGGAGGCTGGGAGTGGAGCGACGATGAGTTTGATGAGGAGAGCGAGGAAGGGAAAGCTGCGATTTCTCAGCTCAGG
Seq C2 exon
TCTCCCCGAGTAAAAGACTCATTGTCAAATTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013136-'22-23,'22-22,26-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=1.000 C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]