MmuEX6069730 @ mm9
Exon Skipping
Gene
ENSMUSG00000036737 | Oxsr1
Description
oxidative-stress responsive 1 [Source:MGI Symbol;Acc:MGI:1917378]
Coordinates
chr9:119160307-119168385:-
Coord C1 exon
chr9:119168320-119168385
Coord A exon
chr9:119163881-119164003
Coord C2 exon
chr9:119160307-119160342
Length
123 bp
Sequences
Splice sites
3' ss Seq
CACACGCCTTTCTCGCTCAGGTC
3' ss Score
8.31
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
AATAAAGAATTTCTTCAAGAAAAAATACTCCAGAGAGCACCTACCATTTCTGAAAGATCTAAAAAG
Seq A exon
GTCCGCAGAGTCCCCGGCTCCAGTGGCCGTCTCCATAAGACAGAGGACGGAGGCTGGGAGTGGAGTGACGATGAGTTTGATGAGGAGAGCGAGGAAGGGAGAGCTGCCATTTCTCAGCTGAGG
Seq C2 exon
TCTCCCCGAGTAAAAGACTCATTATCCAGTTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036737-'19-20,'19-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.963 C2=0.792
Domain overlap (PFAM):
C1:
NO
A:
PF046377=Herpes_pp85=PU(43.6=82.9)
C2:
PF046377=Herpes_pp85=FE(14.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: