HsaEX6055101 @ hg38
Exon Skipping
Gene
ENSG00000172939 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr3:38230365-38242778:+
Coord C1 exon
chr3:38230365-38230430
Coord A exon
chr3:38236839-38236961
Coord C2 exon
chr3:38242743-38242778
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTTTCTAATGAGCAGGTT
3' ss Score
5.46
5' ss Seq
AGGGTAAAT
5' ss Score
5.83
Exon sequences
Seq C1 exon
AATAAAGAATTTCTTCAAGAAAAAACATTGCAGAGAGCACCAACCATTTCTGAAAGAGCAAAAAAG
Seq A exon
GTTCGGAGAGTACCAGGTTCCAGTGGGCGTCTTCATAAGACAGAGGATGGAGGCTGGGAGTGGAGTGATGATGAATTTGATGAAGAAAGTGAGGAAGGGAAAGCAGCAATTTCACAACTCAGG
Seq C2 exon
TCTCCCCGAGTGAAAGAATCAATATCAAATTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172939-'37-41,'37-39,41-41
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.659 A=0.886 C2=0.833
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000311806fB4915
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains