GgaEX6018258 @ galGal4
Exon Skipping
Gene
ENSGALG00000005979 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr2:4900877-4904791:+
Coord C1 exon
chr2:4900877-4900942
Coord A exon
chr2:4901149-4901271
Coord C2 exon
chr2:4904756-4904791
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCTGTCGTTGTGCTGAATAGGTG
3' ss Score
7.67
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
AATAAAGAGTTCTTACAAGAGAAGATGTTACAGAGAGCACCAACAATTACTGAAAGATCCAAAAAG
Seq A exon
GTGAGGAGAGTCCCAGGATCCAGCGGGCGTCTCCATAAGACTGAGGATGGCGGCTGGGAATGGAGTGATGATGAACTAGATGAAGAAAGTGAGGAAGGCAGAGCAGCAATTTCACAGCTCAGG
Seq C2 exon
TCTCCCAGAGTGAAAGAACCTGTACAGAATTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005979-'38-30,'38-28,39-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.727 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACAAGAGAAGATGTTACAGAGAGC
R:
CTCTGAATTCTGTACAGGTTCTTTCA
Band lengths:
90-213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]