GgaEX6018258 @ galGal3
Exon Skipping
Gene
ENSGALG00000005979 | OXSR1
Description
NA
Coordinates
chr2:4830407-4834321:+
Coord C1 exon
chr2:4830407-4830472
Coord A exon
chr2:4830679-4830801
Coord C2 exon
chr2:4834286-4834321
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCTGTCGTTGTGCTGAATAGGTG
3' ss Score
7.67
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
AATAAAGAGTTCTTACAAGAGAAGATGTTACAGAGAGCACCAACAATTACTGAAAGATCCAAAAAG
Seq A exon
GTGAGGAGAGTCCCAGGATCCAGCGGGCGTCTCCATAAGACTGAGGATGGCGGCTGGGAATGGAGTGATGATGAACTAGATGAAGAAAGTGAGGAAGGCAGAGCAGCAATTTCACAGCTCAGG
Seq C2 exon
TCTCCCAGAGTGAAAGAACCTGTACAGAATTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005979-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.727 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACAAGAGAAGATGTTACAGAGAGC
R:
CTCTGAATTCTGTACAGGTTCTTTCA
Band lengths:
90-213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]