BtaEX6100001 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000043991 | SLIT1
Description
slit homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:11085]
Coordinates
chr26:18179525-18180529:-
Coord C1 exon
chr26:18180506-18180529
Coord A exon
chr26:18180225-18180369
Coord C2 exon
chr26:18179525-18179599
Length
145 bp
Sequences
Splice sites
3' ss Seq
CCTCTGCCCTCTCACCACAGGCG
3' ss Score
11.08
5' ss Seq
GCTGTGAGG
5' ss Score
2.85
Exon sequences
Seq C1 exon
CCAAAGAGCAGTACTTCATTCCAG
Seq A exon
GCGCTGAGGACTACCAGCTGAACAGCGAGTGCAACAGCGACGTGGTCTGTCCTCACAAGTGCCGCTGTGAGGCCAGCATGGTGGAATGCTCCAGCCTGAAGCTCACCAAGATCCCTGAGCGCGTACCCCAGGCCACGGCCGAGCT
Seq C2 exon
ACGATTAAACAACAATGAGATTTCCATCCTGGAGGCCACCGGGATGTTTAAAAAACTCACCCATCTGAAGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043991-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0146213=LRRNT=WD(100=57.1),PF127992=LRR_4=PU(2.4=2.0)
C2:
PF127992=LRR_4=FE(59.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGAGCAGTACTTCATTCCA
R:
TTTTCTTCAGATGGGTGAGTTTTT
Band lengths:
98-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]