RnoEX6007310 @ rn6
Exon Skipping
Gene
ENSRNOG00000026065 | Slit1
Description
slit guidance ligand 1 [Source:RGD Symbol;Acc:69307]
Coordinates
chr1:260882485-260883709:-
Coord C1 exon
chr1:260883686-260883709
Coord A exon
chr1:260883395-260883539
Coord C2 exon
chr1:260882485-260882559
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTGCCGTGCTCTCACTACAGGGA
3' ss Score
9.75
5' ss Seq
GCTGTGAGC
5' ss Score
3.2
Exon sequences
Seq C1 exon
CCAAAGAGCAGTACTTCATTCCAG
Seq A exon
GGACGGAGGATTACCACCTGAACAGCGAGTGTACGAGTGACGTGGCCTGTCCCCACAAGTGCCGCTGTGAGGCCAGTGTGGTGGAGTGCTCTGGCCTGAAGCTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACGACTGAGCT
Seq C2 exon
ACGACTGAACAACAATGAGATTTCAATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026065-'22-17,'22-16,23-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0146213=LRRNT=WD(100=57.1),PF127992=LRR_4=PU(4.4=4.1)
C2:
PF127992=LRR_4=FE(55.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGAGCAGTACTTCATTCCA
R:
TTTTCTTCAGATGTGAGAGCTTCT
Band lengths:
98-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]