DreEX6059544 @ danRer10
Exon Skipping
Gene
ENSDARG00000044954 | slit1a
Description
slit homolog 1a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030722-3]
Coordinates
chr13:449155-452111:-
Coord C1 exon
chr13:452088-452111
Coord A exon
chr13:450547-450691
Coord C2 exon
chr13:449155-449229
Length
145 bp
Sequences
Splice sites
3' ss Seq
CATGTGTTGTTTCTCTGCAGGAA
3' ss Score
12.61
5' ss Seq
GCTGTAAGA
5' ss Score
4.19
Exon sequences
Seq C1 exon
CTAAAGAGCAGTACGTCATTCCAG
Seq A exon
GAACTGAAGACTCCAGGCTGAATAACGACTGCAATAATGATCCCGTGTGTCCTGCTAAATGCCGCTGTGAGTCTAATGTCGTGGACTGCTCCAATCTGAGACTCGACCGCATCCCTGAACACATCCCAGCATCCACCACTGAGCT
Seq C2 exon
GCGTCTCAACAATAACGAGATCACCACAATAGAGGCCATGGGTGCTTTCAAGACTCTTACTCACCTCAAGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044954-'16-18,'16-16,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.082 C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
PF0146213=LRRNT=WD(100=57.1),PF138551=LRR_8=PU(8.1=10.2)
C2:
PF138551=LRR_8=FE(40.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAAGAGCAGTACGTCATTCCA
R:
TTTTCTTGAGGTGAGTAAGAGTCT
Band lengths:
98-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]