HsaEX6089772 @ hg38
Exon Skipping
Gene
ENSG00000187122 | SLIT1
Description
slit guidance ligand 1 [Source:HGNC Symbol;Acc:HGNC:11085]
Coordinates
chr10:97046991-97047996:-
Coord C1 exon
chr10:97047973-97047996
Coord A exon
chr10:97047690-97047834
Coord C2 exon
chr10:97046991-97047065
Length
145 bp
Sequences
Splice sites
3' ss Seq
CCCCCACCCTCTCATGGCAGGCA
3' ss Score
9.27
5' ss Seq
ACTGTGAGG
5' ss Score
3.71
Exon sequences
Seq C1 exon
CCAAAGAGCAGTACTTCATTCCAG
Seq A exon
GCACGGAGGATTACCAGCTGAACAGCGAGTGCAACAGCGACGTGGTCTGTCCCCACAAGTGCCGCTGTGAGGCCAACGTGGTGGAGTGCTCCAGCCTGAAGCTCACCAAGATCCCTGAGCGCATCCCCCAGTCCACGGCAGAACT
Seq C2 exon
GCGATTGAATAACAATGAGATTTCCATCCTGGAGGCCACTGGGATGTTTAAAAAACTTACACATCTGAAGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187122-'26-33,'26-32,27-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0146213=LRRNT=WD(100=57.1),PF127992=LRR_4=PU(2.4=2.0)
C2:
PF127992=LRR_4=FE(59.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains