HsaEX6089772 @ hg19
Exon Skipping
Gene
ENSG00000187122 | SLIT1
Description
slit homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:11085]
Coordinates
chr10:98806748-98807753:-
Coord C1 exon
chr10:98807730-98807753
Coord A exon
chr10:98807447-98807591
Coord C2 exon
chr10:98806748-98806822
Length
145 bp
Sequences
Splice sites
3' ss Seq
CCCCCACCCTCTCATGGCAGGCA
3' ss Score
9.27
5' ss Seq
ACTGTGAGG
5' ss Score
3.71
Exon sequences
Seq C1 exon
CCAAAGAGCAGTACTTCATTCCAG
Seq A exon
GCACGGAGGATTACCAGCTGAACAGCGAGTGCAACAGCGACGTGGTCTGTCCCCACAAGTGCCGCTGTGAGGCCAACGTGGTGGAGTGCTCCAGCCTGAAGCTCACCAAGATCCCTGAGCGCATCCCCCAGTCCACGGCAGAACT
Seq C2 exon
GCGATTGAATAACAATGAGATTTCCATCCTGGAGGCCACTGGGATGTTTAAAAAACTTACACATCTGAAGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187122-'22-24,'22-23,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0146213=LRRNT=WD(100=57.1),PF127992=LRR_4=PU(2.4=2.0)
C2:
PF127992=LRR_4=FE(59.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)