MmuEX6032838 @ mm9
Exon Skipping
Gene
ENSMUSG00000025020 | Slit1
Description
slit homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315203]
Coordinates
chr19:41712267-41713396:-
Coord C1 exon
chr19:41713373-41713396
Coord A exon
chr19:41713059-41713203
Coord C2 exon
chr19:41712267-41712341
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTGCCATACTCTCACTCCAGGGA
3' ss Score
8.44
5' ss Seq
GCTGTGAGC
5' ss Score
3.2
Exon sequences
Seq C1 exon
CCAAAGAGCAGTACTTCATTCCAG
Seq A exon
GGACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACGACTGAGCT
Seq C2 exon
ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025020-'19-16,'19-15,20-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0146213=LRRNT=WD(100=57.1),PF127992=LRR_4=PU(4.8=4.1)
C2:
PF127992=LRR_4=FE(59.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGAGCAGTACTTCATTCCA
R:
TTTTCTTCAGATGTGAGAGCTTCT
Band lengths:
98-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: